Open Source Data Visualization Software

A data visualization and processing tool for scanning probe microscopy (SPM, i.e. AFM, STM, MFM, SNOM/NSOM, ...) and profilometry data, useful also for general image and 2D data analysis.

Over 1,000,000 page views per month. Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other quantum chemistry programs. Files can be transferred directly from several databases, including RCSB, EDS, NCI, PubChem, and MaterialsProject. Multiple files can be loaded and compared. A rich scripting language and a well-developed web API allow easy customization of the user interface. Features include interactive animation and linear morphing. Jmol interfaces well with JSpecView for spectroscopy, JSME for 2D->3D conversion, POV-Ray for images, and CAD programs for 3D printing (VRML export).

Viking is a free/open source program to manage GPS data. You can import, plot and create tracks, routes and waypoints, show OSM, Bing Aerial and other maps, geotag images, create routes using OSRM, see real-time GPS position (not in Windows), make maps using Mapnik (not in Windows), control items, etc. It is written in mostly in C (with some C++) & the GTK+3 toolkit. Viking is currently dual managed - with a corresponding Github presence at: https://github.com/viking-gps/viking Where you may find it easier to view the code and raise issues there too.

An easy to use application to design your kitchen garden or your house farm. Helps you plan your plants ( vegetables, fruit trees, herbs, flowers ) so that it respects the rules of crop rotation and companion planting. Based on square foot gardening. Requires Java 8.

This Java application serves to transform W3C XML Schema instances into interactive diagrams in SVG format. The diagram represents structure of XML files and provides information about individual items – elements and attributes.

GpsPrune is a java application to view and manage coordinate data, eg from GPS units. With it you can load a variety of text and Xml formats, view the data (in 2d and 3d), edit and convert the data, correlate photos and audio, create charts and more.

Graphical front-end for GNU Octave. Edit formulas in mathematical notation. Uses Octave (Matlab clone) as a math engine.

iSNS is an interactive neural network simulator written in Java/Java3D. The program is intended to be used in lessons of Neural Networks. The program was developed by students as the software project at Charles University in Prague.

Crispy Plotter is a function graph plotter for mathematical functions, featuring high drawing speed and an intuitive interface that is fun to use.

MathMLWYSIWYGEditor allows users to generate mathematical, physical and engineering formulas using the mathematical markup language, MathML. Requires hardly any knowledge on MathML.

MiniLA logic analyzer software and hardware

Application that simulates gravity interaction between objects in 3D space.

BuddySpace is an enhanced Jabber client providing secure presence management, web services and instant messaging. It extends the 'buddy list' concept with enhanced and customisable visualisation of presence (incl. maps, logical layouts).

E-learning Miner, formerly DŽEMUj is a tool for data mining from e-learning data. Aimed for teachers.

Planimetric Geometry (JCabri) is a rewrite of Cabri Geometry in Java. It provides solution for doing geometric constructions in 2D and exporting them as an animated GIF or Java applet.

Mind map architect program is good tool for brainstorming for single person just as for team. Mind mapping tools can be usable for todo lists, notes, or work planning.

MathML to Braille translator. It's writen in Java + XSL and it uses the Saxon XSLT processor for XML transformations.